The jigs in this thread are pretty cool, but I have to wonder if they are really necessary for creating a JR. style neck joint. I've been getting ready to build a Junior myself based on my real 56 LPJR, and have been putting together in my head how to do it, then I saw this thread.
If you were to switch the order of how things were done, you wouldn't need to make anything like this. Why don't you just make the neck, then clamp the neck where you want it on a fresh, uncut body blank, trace it, and make the neck pocket FIRST. Then fit the neck in the pocket, and strike lines out across the body from the neck to develop the centerline. Then make the rest of your routes (pickup, control cavity, etc) based on that centerline. Then when that's all done, place the body template over top of the blank, find the proper location, center it and trace, then cut and trim. Then do the roundover last for a complete guitar body.
I know the temptation when building a guitar is to start with the fun stuff first... so you trace a template onto a body blank, and cut it out and trim it. Then you make a centerline and do pickup routes, etc... But I think it would be easier if the guitar should be built from the center out, the center being the neck joint...
Just my .02 for what it's worth...
fletch